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Organ atlas

CellHint auto-harmonised and auto-integrated atlas

Blood

Blood

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Blood models
Ren et al. (2021) DOI Yoshida et al. (2021) DOI Stephenson et al. (2021) DOI Dominguez Conde et al. (2022) DOI
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Bone marrow

Bone marrow

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Bone marrow models
He et al. (2020) DOI Tabula Sapiens (2022) DOI Dominguez Conde et al. (2022) DOI Roy et al. (2021) DOI
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Heart

Heart

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Heart models
Koenig et al. (2022) DOI Kuppe et al. (2022) DOI Tucker et al. (2020) DOI Litvinukova et al. (2020) DOI
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Hippocampus

Hippocampus

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Hippocampus models
Franjic et al. (2022) DOI Siletti et al. (2022) DOI Tran et al. (2021) DOI Ayhan et al. (2021) DOI
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Intestine

Intestine

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Intestine models
James et al. (2020) DOI Smillie et al. (2019) DOI Elmentaite et al. (2021) DOI Burclaff et al. (2022) DOI
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Kidney

Kidney

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Kidney models
HCA Kidney (2022) DOI Stewart et al. (2019) DOI Lake et al. (2021) DOI Muto et al. (2021) DOI
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Liver

Liver

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Liver models
Andrews et al. (2022) DOI Guilliams et al. (2022) DOI MacParland et al. (2018) DOI Aizarani et al. (2019) DOI
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Lung

Lung

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Lung models
Madissoon et al. (2022) DOI Travaglini et al. (2020) DOI Madissoon et al. (2020) DOI Adams et al. (2020) DOI
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Lymph node

Lymph node

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Lymph node models
Elmentaite et al. (2021) DOI James et al. (2020) DOI Dominguez Conde et al. (2022) DOI Szabo et al. (2019) DOI
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Pancreas

Pancreas

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Pancreas models
Fasolino et al. (2022) DOI Tosti et al. (2021) DOI Tritschler et al. (2022) DOI Muraro et al. (2016) DOI
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Skeletal muscle

Skeletal muscle

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Skeletal muscle models
He et al. (2020) DOI Tabula Sapiens (2022) DOI Micheli et al. (2020) DOI Perez et al. (2022) DOI
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Spleen

Spleen

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Spleen models
Dominguez Conde et al. (2022) DOI Madissoon et al. (2020) DOI Tabula Sapiens (2022) DOI He et al. (2020) DOI
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About Teichmann Lab in the Cambridge Stem Cell Institute

The Teichmann Lab is based in the Cambridge Stem Cell Institute of the University of Cambridge. The Teichmann lab uses cell-atlasing and cellular genetics to map cells in the human body combining cutting-edge methodologies and computational approaches.

About CellTypist

CellTypist was first developed as a platform for exploring tissue adaptation of cell types using scRNA-seq semi-automatic annotations. Now it's an open source tool for automated cell type annotations as well as a working group in charge of curating models and ontologies.

Citation

If you use any resources or service here, please cite:

Automatic cell-type harmonization and integration across Human Cell Atlas datasets. Cell 186, 5876–5891.e20 (2023). Link

Cross-tissue immune cell analysis reveals tissue-specific features in humans. Science 376, eabl5197 (2022). Link

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Working Group
  • Simone Webb, Laura Jardine (Haniffa Lab)
  • Benjamin Stewart, Kelvin Tuong (Clatworthy Lab)
  • Regina Hoo (Vento-Tormo Lab)
  • Chuan Xu, Cecilia Domínguez Conde, Kylie James, Jongeun Park, Elo Madissoon, Waradon Sungnak, Rasa Elmentaite, Peng He (Teichmann Lab)